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-;;; Emacs Bedrock
-;;;
-;;; Extra config: Researcher
-
-;;; Usage: Append or require this file from init.el for research
-;;; helps. If you write papers in LaTeX and need to manage your
-;;; citations or keep track of notes, this set of packages is for you.
-;;;
-;;; Denote is a note taking package that facilitates a Zettelkasten
-;;; method. Denote works by enforcing a particular file naming
-;;; strategy. This makes it easy to link and tag notes.
-;;;
-;;; NOTE: the Citar package lives on the MELPA repository; you will
-;;; need to update the `package-archives' variable in init.el before
-;;; before loading this; see the comment in init.el under "Package
-;;; initialization".
-;;;
-;;; Highly recommended to enable this file with the UI enhancements in
-;;; `base.el', as Citar works best with the Vertico completing-read
-;;; interface. Also recommended is the `writer.el' extra config, which
-;;; adds some nice features for spell-checking etc.
-
-;;; Contents:
-;;;
-;;;  - Citation Management
-;;;  - Note Taking: Denote
-
-;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
-;;;
-;;;   Critical variables
-;;;
-;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
-
-;;; These variables must be set for Citar to work properly!
-
-(setopt citar-bibliography '("~/refs.bib")) ; paths to your bibtex files
-
-;;; These variables are needed for Denote
-(setopt denote-directory (expand-file-name "~/Documents/notes/"))
-
-;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
-;;;
-;;;   Citation Management
-;;;
-;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
-
-(use-package citar
-  :ensure t
-  :bind (("C-c b" . citar-insert-citation)
-         :map minibuffer-local-map
-         ("M-b" . citar-insert-preset))
-  :custom
-  ;; Allows you to customize what citar-open does
-  (citar-file-open-functions '(("html" . citar-file-open-external)
-                               ;; ("pdf" . citar-file-open-external)
-                               (t . find-file))))
-
-;; Optional: if you have the embark package installed, enable the ability to act
-;; on citations with Citar by invoking `embark-act'.
-;(use-package citar-embark
-;  :after citar embark
-;  :diminish ""
-;  :no-require
-;  :config (citar-embark-mode))
-
-;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
-;;;
-;;;   Note Taking: Denote
-;;;
-;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
-
-;; Denote is a simple but powerful note-taking system that relies on a
-;; file-naming schema to make searching and finding notes easily. The
-;; Denote package provides commands that make the note taking scheme
-;; easy to follow. See the manual at:
-;;
-;;     https://protesilaos.com/emacs/denote
-;;
-(use-package denote
-  :config
-  (denote-rename-buffer-mode)
-  (require 'denote-journal-extras))
-
-;; Integrate citar and Denote: take notes on bibliographic entries
-;; through Denote
-(use-package citar-denote
-  :after (:any citar denote)
-  :custom
-  (citar-denote-file-type 'org)
-  (citar-denote-keyword "bib")
-  (citar-denote-signature nil)
-  (citar-denote-subdir "")
-  (citar-denote-template nil)
-  (citar-denote-title-format "title")
-  (citar-denote-title-format-andstr "and")
-  (citar-denote-title-format-authors 1)
-  (citar-denote-use-bib-keywords t)
-  :init
-  (citar-denote-mode))