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;;; Emacs Bedrock
;;;
;;; Extra config: Researcher
;;; Usage: Append or require this file from init.el for research
;;; helps. If you write papers in LaTeX and need to manage your
;;; citations or keep track of notes, this set of packages is for you.
;;;
;;; Denote is a note taking package that facilitates a Zettelkasten
;;; method. Denote works by enforcing a particular file naming
;;; strategy. This makes it easy to link and tag notes.
;;;
;;; NOTE: the Citar package lives on the MELPA repository; you will
;;; need to update the `package-archives' variable in init.el before
;;; before loading this; see the comment in init.el under "Package
;;; initialization".
;;;
;;; Highly recommended to enable this file with the UI enhancements in
;;; `base.el', as Citar works best with the Vertico completing-read
;;; interface. Also recommended is the `writer.el' extra config, which
;;; adds some nice features for spell-checking etc.
;;; Contents:
;;;
;;; - Citation Management
;;; - Note Taking: Denote
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;;;
;;; Critical variables
;;;
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;;; These variables must be set for Citar to work properly!
(setopt citar-bibliography '("~/refs.bib")) ; paths to your bibtex files
;;; These variables are needed for Denote
(setopt denote-directory (expand-file-name "~/Documents/notes/"))
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;;;
;;; Citation Management
;;;
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
(use-package citar
:ensure t
:bind (("C-c b" . citar-insert-citation)
:map minibuffer-local-map
("M-b" . citar-insert-preset))
:custom
;; Allows you to customize what citar-open does
(citar-file-open-functions '(("html" . citar-file-open-external)
;; ("pdf" . citar-file-open-external)
(t . find-file))))
;; Optional: if you have the embark package installed, enable the ability to act
;; on citations with Citar by invoking `embark-act'.
;(use-package citar-embark
; :after citar embark
; :diminish ""
; :no-require
; :config (citar-embark-mode))
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;;;
;;; Note Taking: Denote
;;;
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; Denote is a simple but powerful note-taking system that relies on a
;; file-naming schema to make searching and finding notes easily. The
;; Denote package provides commands that make the note taking scheme
;; easy to follow. See the manual at:
;;
;; https://protesilaos.com/emacs/denote
;;
(use-package denote
:config
(denote-rename-buffer-mode)
(require 'denote-journal-extras))
;; Integrate citar and Denote: take notes on bibliographic entries
;; through Denote
(use-package citar-denote
:after (:any citar denote)
:custom
(citar-denote-file-type 'org)
(citar-denote-keyword "bib")
(citar-denote-signature nil)
(citar-denote-subdir "")
(citar-denote-template nil)
(citar-denote-title-format "title")
(citar-denote-title-format-andstr "and")
(citar-denote-title-format-authors 1)
(citar-denote-use-bib-keywords t)
:init
(citar-denote-mode))
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