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;;; Emacs Bedrock
;;;
;;; Extra config: Researcher
;;; Usage: Append or require this file from init.el for research helps. If you
;;; write papers in LaTeX and need to manage your citations or keep track of
;;; notes, this set of packages is for you.
;;;
;;; Denote is a simpler alternative to Org-roam: instead of maintaining a
;;; database along side your files, Denote works by enforcing a particular file
;;; naming strategy. This makes it easy to link and tag notes, much in the same
;;; way that Org-roam does. It's generally advisable to not mix Org-roam and
;;; Denote in the same directory.
;;;
;;; NOTE: the packages Citar and Org-roam live on the MELPA repository; you will
;;; need to update the `package-archives' variable in init.el before before
;;; loading this; see the comment in init.el under "Package initialization".
;;;
;;; Highly recommended to enable this file with the UI enhancements in
;;; `base.el', as Citar works best with the Vertico completing-read interface.
;;; Also recommended is the `writer.el' extra config, which adds some nice features for
;;; spell-checking etc.
;;; Contents:
;;;
;;; - Citation Management
;;; - Authoring
;;; - Note Taking: Org-roam
;;; - Note Taking: Denote
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;;;
;;; Critical variables
;;;
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;;; These variables must be set for Citar to work properly!
(setopt citar-bibliography '("~/refs.bib")) ; paths to your bibtex files
;;; These variables are needed for Denote
;(setopt denote-directory (expand-file-name "~/Docs/denote-notes/"))
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;;;
;;; Citation Management
;;;
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
(use-package citar
:ensure t
:bind (("C-c b" . citar-insert-citation)
:map minibuffer-local-map
("M-b" . citar-insert-preset))
:custom
;; Allows you to customize what citar-open does
(citar-file-open-functions '(("html" . citar-file-open-external)
;; ("pdf" . citar-file-open-external)
(t . find-file))))
;; Optional: if you have the embark package installed, enable the ability to act
;; on citations with Citar by invoking `embark-act'.
;(use-package citar-embark
; :after citar embark
; :diminish ""
; :no-require
; :config (citar-embark-mode))
(use-package citar-org-roam
:diminish ""
;; To get this to work both Citar *and* Org-roam have to have been used
:after citar org-roam
:no-require
:config
(citar-org-roam-mode)
(setq citar-org-roam-note-title-template "${author} - ${title}\n#+filetags: ${tags}"))
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;;;
;;; Authoring
;;;
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;;;
;;; Note Taking: Org-roam
;;;
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
(use-package org-roam
:ensure t
:config
;; Make sure the backlinks buffer always shows up in a side window
(add-to-list 'display-buffer-alist
'("\\*org-roam\\*"
(display-buffer-in-side-window)
(side . right)
(window-width . 0.4)
(window-height . fit-window-to-buffer)))
(org-roam-db-autosync-mode))
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;;;
;;; Note Taking: Denote
;;;
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
(use-package denote
:config
;; Accept any symbol in a .dir-locals.el file; makes it easier to use silos.
;; See "silos" in the manual: https://protesilaos.com/emacs/denote
(put 'denote-file-type 'safe-local-variable-p 'symbolp)
)
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